miRBase entry: dse-mir-309

Stem-loop dse-mir-309

Accession

MI0009366

Description

Drosophila sechellia dse-mir-309 precursor miRNA

Sequence

auuauacgacaaaccuuguucgguuuugccaauuuccaagccaGCACUGGGUAAAGUUUGUCCUAuaau
((((((.(((((((.(((((((((.(((.(.........).))).))))))))).))))))).))))))

Structure

      c       c         u   c aau 
auuaua gacaaac uuguucggu uug c   u
|||||| ||||||| ||||||||| ||| |   u
uaauAU CUGUUUG AAUGGGUCA Gac g   c
      C       A         C   c aac

Annotation confidence Not enough data

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Genome context

scaffold_1: 13063938-13064006 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-309

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-309

Accession	MIMAT0008803
Description	Drosophila sechellia dse-miR-309 mature miRNA
Sequence	44 - GCACUGGGUAAAGUUUGUCCUA - 65
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218