miRBase entry: dse-mir-306

Stem-loop dse-mir-306

Accession

MI0009367

Description

Drosophila sechellia dse-mir-306 precursor miRNA

Sequence

uccacucgauggcUCAGGUACUUAGUGACUCUCAAugccuuugacauuuuGGGGGUCACUCUGUGCCUGUGCugccagugggac
((((((.(.((((.(((((((..((((((((((((.............))))))))))))..))))))).))))).))))))..

Structure

--      c a    U       UU            ugccu 
  uccacu g uggc CAGGUAC  AGUGACUCUCAA     u
  |||||| | |||| |||||||  ||||||||||||     u
  ggguga c guCG GUCCGUG  UCACUGGGGGuu     g
ca      c -    U       UC            uuaca

Annotation confidence Not enough data

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Genome context

scaffold_7: 345422-345505 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-306-5p

Accession	MIMAT0008804
Description	Drosophila sechellia dse-miR-306-5p mature miRNA
Sequence	14 - UCAGGUACUUAGUGACUCUCAA - 35
Evidence	not_experimental

Mature dse-miR-306-3p

Accession	MIMAT0008805
Description	Drosophila sechellia dse-miR-306-3p mature miRNA
Sequence	51 - GGGGGUCACUCUGUGCCUGUGC - 72
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218