Stem-loop dse-mir-306

Accession

MI0009367

Description

Drosophila sechellia dse-mir-306 precursor miRNA

Sequence

uccacucgauggcUCAGGUACUUAGUGACUCUCAAugccuuugacauuuuGGGGGUCACUCUGUGCCUGUGCugccagugggac
((((((.(.((((.(((((((..((((((((((((.............))))))))))))..))))))).))))).))))))..

Structure

--      c a    U       UU            ugccu 
  uccacu g uggc CAGGUAC  AGUGACUCUCAA     u
  |||||| | |||| |||||||  ||||||||||||     u
  ggguga c guCG GUCCGUG  UCACUGGGGGuu     g
ca      c -    U       UC            uuaca 

Annotation confidence Not enough data

Genome context

scaffold_7: 345422-345505 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-306

Mature dse-miR-306-5p

• Accession: MIMAT0008804
• Description: Drosophila sechellia dse-miR-306-5p mature miRNA
• Sequence: 14 - UCAGGUACUUAGUGACUCUCAA - 35
• Evidence: not_experimental

Mature dse-miR-306-3p

• Accession: MIMAT0008805
• Description: Drosophila sechellia dse-miR-306-3p mature miRNA
• Sequence: 51 - GGGGGUCACUCUGUGCCUGUGC - 72
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218