miRBase entry: dse-mir-13b-1

Stem-loop dse-mir-13b-1

Accession

MI0009380

Description

Drosophila sechellia dse-mir-13b-1 precursor miRNA

Sequence

ccaugucguuaaaauguuugugaacuuauguauucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac

Annotation confidence Not enough data

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Genome context

scaffold_0: 10705205-10705272 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-13b

Accession	MIMAT0008816
Description	Drosophila sechellia dse-miR-13b mature miRNA
Sequence	43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218