Stem-loop dse-mir-275

Accession

MI0009383

Description

Drosophila sechellia dse-mir-275 precursor miRNA

Sequence

19098 reads, 6011.0 reads per million, 1 experiments

aagucuccuaccuugCGCGCUAAUCAGUGACCGGGGCUUGuuuuuuauauacagUCAGGUACCUGAAGUAGCGCGCGugguggcagacau
..((((.(((((.(((((((((.((((..(((..((((.((.........)))))).)))..))))..))))))))).))))).))))..

Structure

aa    c     u         -A    UG   GG    U  uuu 
  gucu cuacc ugCGCGCUA  UCAG  ACC  GGCU Gu   u
  |||| ||||| |||||||||  ||||  |||  |||| ||   u
  caga ggugg GCGCGCGAU  AGUC  UGG  CUga ca   a
ua    c     u         GA    CA   -A    -  uau 

Annotation confidence High

Genome context

scaffold_3: 2941259-2941348 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-275

Mature dse-miR-275-5p

• Accession: MIMAT0053470
• Description: Drosophila sechellia dse-miR-275-5p mature miRNA
• Sequence: 16 - CGCGCUAAUCAGUGACCGGGGCUUG - 40
• Evidence: not_experimental

Mature dse-miR-275-3p

• Accession: MIMAT0008820
• Description: Drosophila sechellia dse-miR-275-3p mature miRNA
• Sequence: 55 - UCAGGUACCUGAAGUAGCGCGCG - 77
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218