miRBase entry: dse-mir-275

Stem-loop dse-mir-275

Accession

MI0009383

Description

Drosophila sechellia dse-mir-275 precursor miRNA

Sequence

aagucuccuaccuugcgcgcuaaucagugaccggggcuuguuuuuuauauacagUCAGGUACCUGAAGUAGCGCGCGugguggcagacau
..((((.(((((.(((((((((.((((..(((..((((.((.........)))))).)))..))))..))))))))).))))).))))..

Structure

aa    c     u         -a    ug   gg    u  uuu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcu gu   u
  |||| ||||| |||||||||  ||||  |||  |||| ||   u
  caga ggugg GCGCGCGAU  AGUC  UGG  CUga ca   a
ua    c     u         GA    CA   -A    -  uau

Annotation confidence Not enough data

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Genome context

scaffold_3: 2941259-2941348 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-275

Accession	MIMAT0008820
Description	Drosophila sechellia dse-miR-275 mature miRNA
Sequence	55 - UCAGGUACCUGAAGUAGCGCGCG - 77
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218