miRBase entry: dse-mir-9b

Stem-loop dse-mir-9b

Accession

MI0009389

Description

Drosophila sechellia dse-mir-9b precursor miRNA

Sequence

ugcauauuauuuggUCUUUGGUGAUUUUAGCUGUAUGguguauaaguauuccauagagcuuuauuaccaaaaaccaaaugguuucugca
((((.((((((((((.(((((((((...((((.(((((.(((....))).))))).))))..))))))))).))))))))))...))))

Structure

    --u          C         UUU    G     u   u 
ugca   auuauuuggU UUUGGUGAU   AGCU UAUGg gua a
||||   |||||||||| |||||||||   |||| ||||| |||  
acgu   ugguaaacca aaaccauua   ucga auacc uau a
    cuu          a         -uu    g     u   g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_7: 345756-345844 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-9b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-9b

Accession	MIMAT0008827
Description	Drosophila sechellia dse-miR-9b mature miRNA
Sequence	15 - UCUUUGGUGAUUUUAGCUGUAUG - 37
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218