miRBase entry: dse-mir-2a-1

Stem-loop dse-mir-2a-1

Accession

MI0009397

Description

Drosophila sechellia dse-mir-2a-1 precursor miRNA

Sequence

gcugggcucucaaagugguugugaaaugcauuuccgcuuugcgcggcaUAUCACAGCCAGCUUUGAUGAGCuuagc
((((((((((((((((((((((((.((((.....(((.....))))))).))))))))).)))))).)))))))))

Structure

         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_7: 3184259-3184334 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-mir-2a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-2a

Accession	MIMAT0008819
Description	Drosophila sechellia dse-miR-2a mature miRNA
Sequence	49 - UAUCACAGCCAGCUUUGAUGAGC - 71
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218