miRBase entry: dse-let-7

Stem-loop dse-let-7

Accession

MI0009400

Description

Drosophila sechellia dse-let-7 precursor miRNA

Literature search

1 open access papers mention dse-let-7
(4 sentences)

Sequence

43785 reads, 13782.0 reads per million, 1 experiments

ucuggcaaauUGAGGUAGUAGGUUGUAUAGUaguaauuacacaucauaCUAUACAAUGUGCUAGCUUUCUUugcuuga
((.((((((..(((.(((((.(((((((((((..............))))))))))).))))).)))..)))))).))

Structure

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguUU  UUC AUCGU UAACAUAUCau      c
  u      CU   G     G           acuaca

Annotation confidence High

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Genome context

scaffold_7: 2097982-2098059 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-let-7

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-let-7-5p

Accession	MIMAT0008837
Description	Drosophila sechellia dse-let-7-5p mature miRNA
Sequence	11 - UGAGGUAGUAGGUUGUAUAGU - 31
Evidence	not_experimental

Mature dse-let-7-3p

Accession	MIMAT0053473
Description	Drosophila sechellia dse-let-7-3p mature miRNA
Sequence	49 - CUAUACAAUGUGCUAGCUUUCUU - 71
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218