Stem-loop dsi-mir-34

Accession

MI0009405

Description

Drosophila simulans dsi-mir-34 precursor miRNA

Literature search

1 open access papers mention dsi-mir-34
(1 sentences)

Sequence

2778 reads, 11519.0 reads per million, 6 experiments

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaauuauugccguugacaauucaCAGCCACUAUCUUCACUGCCGCCgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((..(.((((.......)))).)....))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  GCCGUCAC UC AUC ACCGACac    c guug  g
--   -  a   CC        U  U   -        uuaa a    cc 

Annotation confidence High

Genome context

ref|NT_479536.1|: 15121772-15121867 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dsi-mir-34

Mature dsi-miR-34-5p

• Accession: MIMAT0008840
• Description: Drosophila simulans dsi-miR-34-5p mature miRNA
• Sequence: 14 - UGGCAGUGUGGUUAGCUGGUUG - 35
• Evidence: not_experimental

Mature dsi-miR-34-3p

• Accession: MIMAT0053476
• Description: Drosophila simulans dsi-miR-34-3p mature miRNA
• Sequence: 65 - CAGCCACUAUCUUCACUGCCGCC - 87
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218