miRBase entry: dsi-mir-2c

Stem-loop dsi-mir-2c

Accession

MI0009419

Description

Drosophila simulans dsi-mir-2c precursor miRNA

Sequence

ucguaucuuacuuucaaugucaucaaaaagggcugaagaaagauauuucugcauuugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcagcga
((((..((((.((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).))))))).))))))..))))

Structure

    au    c  u       -      aag     aagaaa     --   ug 
ucgu  cuua uu caauguc aucaaa   ggcug      gauau  uuc  c
||||  |||| || ||||||| ||||||   |||||      |||||  |||  a
agcg  gagu aa guuaCGG UAGUUU   CCGAC      CUAUg  aag  u
    ac    -  c       G      CGA     -----A     cu   uu

Annotation confidence Not enough data

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Genome context

chr3R: 10237611-10237712 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dsi-mir-2c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-2c

Accession	MIMAT0008854
Description	Drosophila simulans dsi-miR-2c mature miRNA
Sequence	63 - UAUCACAGCCAGCUUUGAUGGGC - 85
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218