Stem-loop dsi-mir-11

Accession

MI0009430

Description

Drosophila simulans dsi-mir-11 precursor miRNA

Sequence

1003 reads, 6226.0 reads per million, 6 experiments

gcacuuguCAAGAACUUUCUCUGUGACCCGcguguacuuaaaagccgCAUCACAGUCUGAGUUCUUGCugagugc
(((((((.(((((((((...((((((...(((.((........))))).))))))...))))))))).)))))))

Structure

       u         UCU      CCC   u  acu 
gcacuug CAAGAACUU   CUGUGA   Gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 

Annotation confidence High

Genome context

ref|NT_479536.1|: 3864424-3864498 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dsi-mir-11

Mature dsi-miR-11-5p

• Accession: MIMAT0053482
• Description: Drosophila simulans dsi-miR-11-5p mature miRNA
• Sequence: 9 - CAAGAACUUUCUCUGUGACCCG - 30
• Evidence: not_experimental

Mature dsi-miR-11-3p

• Accession: MIMAT0008865
• Description: Drosophila simulans dsi-miR-11-3p mature miRNA
• Sequence: 48 - CAUCACAGUCUGAGUUCUUGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218