miRBase entry: dsi-mir-279

Stem-loop dsi-mir-279

Accession

MI0009463

Description

Drosophila simulans dsi-mir-279 precursor miRNA

Literature search

1 open access papers mention dsi-mir-279
(1 sentences)

Sequence

675 reads, 5984.0 reads per million, 6 experiments

auacugcuguuuuuaguggguggggguccaguguuucacauugauuuucuuaguauuugUGACUAGAUCCACACUCAUUAAuaacgguaguuc
..(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).)))))))))..

Structure

au         u          g     c  uguu     uug   u 
  acugcuguu uuagugggug ggguc ag    ucaca   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ref|NT_479536.1|: 24399669-24399761 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dsi-mir-279

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-279-3p

Accession	MIMAT0008896
Description	Drosophila simulans dsi-miR-279-3p mature miRNA
Sequence	60 - UGACUAGAUCCACACUCAUUAA - 81
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218