miRBase entry: dsi-mir-288

Stem-loop dsi-mir-288

Accession

MI0009464

Description

Drosophila simulans dsi-mir-288 precursor miRNA

Sequence

cggucaugucguaauuagcggagcacggcauugccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((.((((((....((.((((..((((((.(((((((........((((....)))))))))))...)))))).)))).))..)))))).)))))

Structure

     a      aauu  c    ca      --u       auaauuaa    g 
cgguc ugucgu    ag ggag  cggcau   gccggcg        ugac g
||||| ||||||    || ||||  ||||||   |||||||        ||||  
gccgg acaGUA    UU CUUU  GCUGUA   Ugguugc        acug u
     c      --CU  A    -A      CUU       --------    g

Annotation confidence Not enough data

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Genome context

chr2L: 20181636-20181732 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dsi-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-288

Accession	MIMAT0008897
Description	Drosophila simulans dsi-miR-288 mature miRNA
Sequence	66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218