miRBase entry: dsi-mir-6-2

Stem-loop dsi-mir-6-2

Accession

MI0009473

Description

Drosophila simulans dsi-mir-6-2 precursor miRNA

Sequence

uaaccccAGGGAACUUCUGCUGCUGAUAUAuuauugaaaaacuccuaUAUCACAGUGGCUGUUCUUUUUgguug
(((((..(((((((..((((((.(((((((...............)))))))))))))..)))))))..)))))

Structure

     cc       UU      C       uuauug 
uaacc  AGGGAAC  CUGCUG UGAUAUA      a
|||||  |||||||  |||||| |||||||      a
guugg  UUUCUUG  GGUGAC ACUAUau      a
     UU       UC      -       ccucaa

Annotation confidence Not enough data

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Genome context

chr2R: 14253809-14253882 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-6-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-6-3p

Accession	MIMAT0008885
Description	Drosophila simulans dsi-miR-6-3p mature miRNA
Sequence	48 - UAUCACAGUGGCUGUUCUUUUU - 69
Evidence	experimental Illumina [2]

Mature dsi-miR-6-5p

Accession	MIMAT0015283
Description	Drosophila simulans dsi-miR-6-5p mature miRNA
Sequence	8 - AGGGAACUUCUGCUGCUGAUAUA - 30
Evidence	experimental Illumina [2]

References

PubMed ID: 20037610
Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
"Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
"Nat Genet (2010) 42:6-9

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218