miRBase entry: dvi-mir-2c

Stem-loop dvi-mir-2c

Accession

MI0009478

Description

Drosophila virilis dvi-mir-2c precursor miRNA

Literature search

1 open access papers mention dvi-mir-2c
(1 sentences)

Sequence

caugucuuacuuucaaugUCAUCAAAAAGGGCUGAGAAUgauauaucugcaauugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaagggcaac
..((((...(((((((((((((((((...(((((.(((((((.((........)).))))).)).)))))...)))))).))))))).))))))))..

Structure

ca    uua    -       -      AAG     A  -     a  ucu 
  uguc   cuuu caaugUC AUCAAA   GGCUG GA AUgau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
ca    ---    c       G      CGA     A  A     a  uaa

Annotation confidence Not enough data

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Genome context

scaffold_13047: 13335417-13335514 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-2c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-2c-3p

Accession	MIMAT0008910
Description	Drosophila virilis dvi-miR-2c-3p mature miRNA
Sequence	61 - UAUCACAGCCAGCUUUGAUGGGC - 83
Evidence	experimental Illumina [2]

Mature dvi-miR-2c-5p

Accession	MIMAT0032044
Description	Drosophila virilis dvi-miR-2c-5p mature miRNA
Sequence	19 - UCAUCAAAAAGGGCUGAGAAU - 39
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372