miRBase entry: dvi-mir-306

Stem-loop dvi-mir-306

Accession

MI0009481

Description

Drosophila virilis dvi-mir-306 precursor miRNA

Sequence

ccgcugcUCAGGUACUUAGUGACUCUCAaucaucuauugcuuugcauaccuuGAGGGUCGCUCUGUGCCUGUGCcgccu
..((.((.(((((((..((((((((((((........(((...)))....))))))))))))..))))))).)).))..

Structure

cc  u  U       UU            ucaucuau   u 
  gc gc CAGGUAC  AGUGACUCUCAa        ugc  
  || || |||||||  ||||||||||||        ||| u
  cg CG GUCCGUG  UCGCUGGGAGuu        acg  
uc  c  U       UC            ----ccau   u

Annotation confidence Not enough data

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Genome context

scaffold_12963: 12863214-12863292 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dvi-mir-306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-306-5p

Accession	MIMAT0008913
Description	Drosophila virilis dvi-miR-306-5p mature miRNA
Sequence	8 - UCAGGUACUUAGUGACUCUCA - 28
Evidence	experimental Illumina [2]

Mature dvi-miR-306-3p

Accession	MIMAT0008914
Description	Drosophila virilis dvi-miR-306-3p mature miRNA
Sequence	53 - GAGGGUCGCUCUGUGCCUGUGC - 74
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372