Stem-loop dvi-mir-279

Accession

MI0009482

Description

Drosophila virilis dvi-mir-279 precursor miRNA

Literature search

3 open access papers mention dvi-mir-279
(9 sentences)

Sequence

858570 reads, 4275.0 reads per million, 39 experiments

guacuacuguuuuuaGUGAGUGAGGGUCCAGUGUUUCACAuucguuuuuucaaguauuugUGACUAGAUCCACACUCAUUaacaacgguaguuc
..(((((((((.((((((((((.(((((.((....(((((..................))))))).))))).)))))))))).)))))))))..

Structure

gu         u          A     C  UGUU     uucguuuu 
  acuacuguu uuaGUGAGUG GGGUC AG    UCACA        u
  ||||||||| |||||||||| ||||| ||    |||||         
  ugauggcaa aaUUACUCAC CCUAG UC    AGUgu        u
cu         c          A     A  ----     uuaugaac 

Annotation confidence High

Genome context

scaffold_12822: 2330926-2331019 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-279

Mature dvi-miR-279-5p

• Accession: MIMAT0032047
• Description: Drosophila virilis dvi-miR-279-5p mature miRNA
• Sequence: 16 - GUGAGUGAGGGUCCAGUGUUUCACA - 40
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-279-3p

• Accession: MIMAT0008915
• Description: Drosophila virilis dvi-miR-279-3p mature miRNA
• Sequence: 61 - UGACUAGAUCCACACUCAUU - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372