Stem-loop dvi-mir-11

Accession

MI0009483

Description

Drosophila virilis dvi-mir-11 precursor miRNA

Literature search

1 open access papers mention dvi-mir-11
(2 sentences)

Sequence

1319661 reads, 8980.0 reads per million, 39 experiments

gcacuuauCAAGAACUUUUUCUGUGACUUGCgugaacucuuauaugcaaaccgCAUCACAGUCUGAGUUCUUGCUUagcgc
((.((...(((((((((...((((((.(((((((........)))))))......))))))...)))))))))...)).))

Structure

  a  uau         UUU      -----C       aac 
gc cu   CAAGAACUU   CUGUGA      UUGCgug   u
|| ||   |||||||||   ||||||      |||||||    
cg ga   GUUCUUGAG   GACACU      aacguau   c
  c  UUC         UCU      ACgcca       auu 

Annotation confidence High

Genome context

scaffold_13047: 6338951-6339031 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-11

Mature dvi-miR-11-5p

• Accession: MIMAT0032048
• Description: Drosophila virilis dvi-miR-11-5p mature miRNA
• Sequence: 9 - CAAGAACUUUUUCUGUGACUUGC - 31
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-11-3p

• Accession: MIMAT0008916
• Description: Drosophila virilis dvi-miR-11-3p mature miRNA
• Sequence: 54 - CAUCACAGUCUGAGUUCUUGCUU - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372