Stem-loop dvi-mir-125

Accession

MI0009484

Description

Drosophila virilis dvi-mir-125 precursor miRNA

Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGacuuuuaauaccaguuucACAAGUUUUGAUCUCCGGUAUuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure

     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGa      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguUA  GG CUCU G  UUGAACAcu      a
     gu    --      --ca     -U  C    A UU         uugacc 

Annotation confidence Not enough data

Genome context

scaffold_12963: 18451658-18451767 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-125

Mature dvi-miR-125-5p

• Accession: MIMAT0008917
• Description: Drosophila virilis dvi-miR-125-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCCUAACUUGUG - 49
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-125-3p

• Accession: MIMAT0032049
• Description: Drosophila virilis dvi-miR-125-3p mature miRNA
• Sequence: 68 - ACAAGUUUUGAUCUCCGGUAU - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372