Stem-loop dvi-mir-318

Accession

MI0009489

Description

Drosophila virilis dvi-mir-318 precursor miRNA

Literature search

1 open access papers mention dvi-mir-318
(2 sentences)

Sequence

1096605 reads, 18763.0 reads per million, 39 experiments

uuuaugGGAUACACCAAGUUCAGUUUUGUcagauguccaagcaUCACUGGGCUUUGUUUAUCUCAUaag
.((((((((((.((.(((((((((.......(((((....)))))))))))))).)).)))))))))).

Structure

u          C  C         UUUGUca     c 
 uuaugGGAUA AC AAGUUCAGU       gaugu c
 |||||||||| || |||||||||       |||||  
 aaUACUCUAU UG UUCGGGUCA       CUacg a
g          U  U         -------     a 

Annotation confidence Medium

Genome context

scaffold_13047: 1194332-1194400 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-318

Mature dvi-miR-318-5p

• Accession: MIMAT0053497
• Description: Drosophila virilis dvi-miR-318-5p mature miRNA
• Sequence: 7 - GGAUACACCAAGUUCAGUUUUGU - 29
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-318-3p

• Accession: MIMAT0008922
• Description: Drosophila virilis dvi-miR-318-3p mature miRNA
• Sequence: 44 - UCACUGGGCUUUGUUUAUCUCAU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372