Stem-loop dvi-mir-281-2

Accession

MI0009493

Description

Drosophila virilis dvi-mir-281-2 precursor miRNA

Sequence

1885036 reads, 7140.0 reads per million, 39 experiments

cgaauagcgaaaugAAGAGAGCUAUCCGUCGACAGUCaagcuauacagauuguaauaCUGUCAUGGAAUUGCUCUCUUUGuauaauauucg
((((((.....(((((((((((..(((((.((((((...((..........))...)))))))))))...)))))))))))....))))))

Structure

      gcgaa           -UA     C      Caa  uaua 
cgaaua     augAAGAGAGC   UCCGU GACAGU   gc    c
||||||     |||||||||||   ||||| ||||||   ||     
gcuuau     uGUUUCUCUCG   AGGUA CUGUCa   ug    a
      -aaua           UUA     -      uaa  uuag 

Annotation confidence High

Genome context

scaffold_12875: 19830112-19830202 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-281-2

Mature dvi-miR-281-2-5p

• Accession: MIMAT0009188
• Description: Drosophila virilis dvi-miR-281-2-5p mature miRNA
• Sequence: 15 - AAGAGAGCUAUCCGUCGACAGUC - 37
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-281-3p

• Accession: MIMAT0008927
• Description: Drosophila virilis dvi-miR-281-3p mature miRNA
• Sequence: 58 - CUGUCAUGGAAUUGCUCUCUUUG - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372