Stem-loop dvi-mir-9a

Accession

MI0009495

Description

Drosophila virilis dvi-mir-9a precursor miRNA

Literature search

2 open access papers mention dvi-mir-9a
(4 sentences)

Sequence

2652172 reads, 9954.0 reads per million, 38 experiments

cuauguugUCUUUGGUUAUCUAGCUGUAUGagugauaaauaacgucaUAAAGCUAGCUUACCGAAGUUaauauua
..((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))))..

Structure

cu      U       UAU      G     -  gau 
  auguug CUUUGGU   CUAGCU UAUGa gu   a
  |||||| |||||||   |||||| ||||| ||    
  uauaaU GAAGCCA   GAUCGA AUacu ca   a
au      U       UUC      A     g  aua 

Annotation confidence High

Genome context

scaffold_13049: 13137024-13137098 [+]

Mature dvi-miR-9a-5p

• Accession: MIMAT0008929
• Description: Drosophila virilis dvi-miR-9a-5p mature miRNA
• Sequence: 9 - UCUUUGGUUAUCUAGCUGUAUG - 30
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-9a-3p

• Accession: MIMAT0032057
• Description: Drosophila virilis dvi-miR-9a-3p mature miRNA
• Sequence: 48 - UAAAGCUAGCUUACCGAAGUU - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372