Stem-loop dvi-mir-310

Accession

MI0009500

Description

Drosophila virilis dvi-mir-310 precursor miRNA

Literature search

1 open access papers mention dvi-mir-310
(1 sentences)

Sequence

aucauuuuuAGGCCGUGCUCUGUGUGAAUAUGuuuuuaacuauaaucaUAUUGCACAUCUCCCGGCCUAUaagugu
..(((((.(((((((.....(((((.((((((.((........)).))))))))))).....))))))).))))).

Structure

au     u       UGCUC     G      u  uua 
  cauuu uAGGCCG     UGUGU AAUAUG uu   a
  ||||| |||||||     ||||| |||||| ||    
  gugaa AUCCGGC     ACACG UUAUac aa   c
-u     U       CCUCU     -      u  uau 

Annotation confidence Not enough data

Genome context

scaffold_12875: 13668747-13668822 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-310

Mature dvi-miR-310-3p

• Accession: MIMAT0008934
• Description: Drosophila virilis dvi-miR-310-3p mature miRNA
• Sequence: 49 - UAUUGCACAUCUCCCGGCCUAU - 70
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-310-5p

• Accession: MIMAT0032060
• Description: Drosophila virilis dvi-miR-310-5p mature miRNA
• Sequence: 10 - AGGCCGUGCUCUGUGUGAAUAUG - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372