miRBase entry: dvi-mir-13b-1

Stem-loop dvi-mir-13b-1

Accession

MI0009504

Description

Drosophila virilis dvi-mir-13b-1 precursor miRNA

Sequence

ccaugUCGUUAAAAUGCCUGUGACCUUAUGuauuuuauaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure

   -ug           C      CCU    uauu 
cca   UCGUUAAAAUG CUGUGA   UAUG    u
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaua

Annotation confidence Not enough data

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Genome context

scaffold_13047: 13335793-13335860 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-13b-3p

Accession	MIMAT0008938
Description	Drosophila virilis dvi-miR-13b-3p mature miRNA
Sequence	43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence	experimental Illumina [2]

Mature dvi-miR-13b-5p

Accession	MIMAT0032064
Description	Drosophila virilis dvi-miR-13b-5p mature miRNA
Sequence	6 - UCGUUAAAAUGCCUGUGACCUUAUG - 30
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372