Stem-loop dvi-mir-305

Accession

MI0009506

Description

Drosophila virilis dvi-mir-305 precursor miRNA

Literature search

1 open access papers mention dvi-mir-305
(1 sentences)

Sequence

caugucuAUUGUACUUCAUCAGGUGCUCuggugugacuuguaaccCGGCACAUGUUGAAGUACACUCAauaug
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))

Structure

     cuAU         U  G     Cu  u  gac 
caugu    UGUACUUCA CA GUGCU  gg gu   u
|||||    ||||||||| || |||||  || ||    
guaua    ACAUGAAGU GU CACGG  Cc ca   u
     ACUC         U  A     --  -  aug 

Annotation confidence Low

Genome context

scaffold_12963: 15419842-15419914 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-305

Mature dvi-miR-305-5p

• Accession: MIMAT0008940
• Description: Drosophila virilis dvi-miR-305-5p mature miRNA
• Sequence: 8 - AUUGUACUUCAUCAGGUGCUC - 28
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-305-3p

• Accession: MIMAT0032066
• Description: Drosophila virilis dvi-miR-305-3p mature miRNA
• Sequence: 46 - CGGCACAUGUUGAAGUACACUCA - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372