Stem-loop dvi-mir-277

Accession

MI0009513

Description

Drosophila virilis dvi-mir-277 precursor miRNA

Literature search

1 open access papers mention dvi-mir-277
(1 sentences)

Sequence

caguuuugggcugCGUGUCAGGAGUGCAUUUGCAcugaaacauucugaaagcuugUAAAUGCACUAUCUGGUACGACAuuccagaacgu
..((((((((.(((((((((((((((((((((((((.............))..)))))))))))).))))))))).)).))))))))..

Structure

ca        c  -         -            --  gaaac 
  guuuuggg ug CGUGUCAGG AGUGCAUUUGCA  cu     a
  |||||||| || ||||||||| ||||||||||||  ||     u
  caagaccu AC GCAUGGUCU UCACGUAAAUgu  ga     u
ug        u  A         A            uc  aaguc 

Annotation confidence Not enough data

Genome context

scaffold_12855: 2684222-2684310 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-277

Mature dvi-miR-277-3p

• Accession: MIMAT0008946
• Description: Drosophila virilis dvi-miR-277-3p mature miRNA
• Sequence: 56 - UAAAUGCACUAUCUGGUACGACA - 78
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-277-5p

• Accession: MIMAT0032072
• Description: Drosophila virilis dvi-miR-277-5p mature miRNA
• Sequence: 14 - CGUGUCAGGAGUGCAUUUGCA - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372