Stem-loop dvi-mir-281-1

Accession

MI0009514

Description

Drosophila virilis dvi-mir-281-1 precursor miRNA

Sequence

582776 reads, 2092.0 reads per million, 39 experiments

cgaauaagugaauAAAGAGAGCUGUCCGUCGACAguccaguaacaaauguaauaCUGUCAUGGAAUUGCUCUCUUUGuaugauauucg
((((((.....(((((((((((..(((((.((((((...((.((....)).)))))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      cca  a  a 
cgaaua     auAAAGAGAGC   UCCGU GACAgu   gu ac a
||||||     |||||||||||   ||||| ||||||   || ||  
gcuuau     uGUUUCUCUCG   AGGUA CUGUCa   ua ug a
      -agua           UUA     -      ---  a  u 

Annotation confidence High

Genome context

scaffold_12875: 19829928-19830015 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-281-1

Mature dvi-miR-281-1-5p

• Accession: MIMAT0008926
• Description: Drosophila virilis dvi-miR-281-1-5p mature miRNA
• Sequence: 14 - AAAGAGAGCUGUCCGUCGACA - 34
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-281-3p

• Accession: MIMAT0008927
• Description: Drosophila virilis dvi-miR-281-3p mature miRNA
• Sequence: 55 - CUGUCAUGGAAUUGCUCUCUUUG - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372