miRBase entry: dvi-mir-288

Stem-loop dvi-mir-288

Accession

MI0009519

Description

Drosophila virilis dvi-mir-288 precursor miRNA

Sequence

cagccgcgucguaauuagcugugcacaacguugcuggcgauaauuaaugacuuuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
..((((.(((((((((.((((.((.((((((.(((((..((.....))..))..))).))))))))..)).)).)))).......))))).))))..

Structure

ca    c     -------    a  -  -u  a      u   --  cg  a 
  gccg gucgu       aauu gc ug  gc caacgu gcu  gg  au a
  |||| |||||       |||| || ||  || |||||| |||  ||  || u
  cggc caGUA       UUAG UG AC  Ug guugca ugg  uc  ua u
gc    a     CUUUACU    C  U  UU  -      c   uu  ag  a

Annotation confidence Not enough data

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Genome context

scaffold_12963: 13472851-13472947 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-288

Accession	MIMAT0008952
Description	Drosophila virilis dvi-miR-288 mature miRNA
Sequence	66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372