Stem-loop dvi-mir-307

Accession

MI0009520

Description

Drosophila virilis dvi-mir-307 precursor miRNA

Literature search

1 open access papers mention dvi-mir-307
(2 sentences)

Sequence

73432 reads, 313.0 reads per million, 36 experiments

ugucuugcuuugACUCACUCAACCUGGGUGUGAuguuaguucgauuugguauccaUCACAACCUCCUUGAGUGAGCgauagcaggaua
((((((((((((.(((((((((...((.(((((((.((.(.......).))..))))))).))...)))))))))))).)))))))))

Structure

         -   A         CCU  G       -u  g uc 
ugucuugcu uug CUCACUCAA   GG UGUGAug  ua u  g
||||||||| ||| |||||||||   || |||||||  || |  a
auaggacga agC GAGUGAGUU   CC ACACUac  au g  u
         u   -         CCU  A       cu  g uu 

Annotation confidence Medium

Genome context

scaffold_12875: 5789456-5789543 [-]

Mature dvi-miR-307-5p

• Accession: MIMAT0053498
• Description: Drosophila virilis dvi-miR-307-5p mature miRNA
• Sequence: 13 - ACUCACUCAACCUGGGUGUGA - 33
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-307-3p

• Accession: MIMAT0008953
• Description: Drosophila virilis dvi-miR-307-3p mature miRNA
• Sequence: 56 - UCACAACCUCCUUGAGUGAGC - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372