Stem-loop dvi-mir-5

Accession

MI0009529

Description

Drosophila virilis dvi-mir-5 precursor miRNA

Literature search

2 open access papers mention dvi-mir-5
(2 sentences)

Sequence

cuaAAAGGAACGAUCGUUGUGAUAUGcguucauuaaccguuacaUAUCACAGUGAUUUUCCUUUAUagcg
((((((((((.(((((((((((((((................)))))))))))))))))))))).)))..

Structure

--   -       C               cguucau 
  cua AAAGGAA GAUCGUUGUGAUAUG       u
  ||| ||||||| |||||||||||||||        
  gaU UUUCCUU UUAGUGACACUAUac       a
gc   A       -               auugcca 

Annotation confidence Not enough data

Genome context

scaffold_12875: 4112468-4112537 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dvi-mir-5

Mature dvi-miR-5-5p

• Accession: MIMAT0008961
• Description: Drosophila virilis dvi-miR-5-5p mature miRNA
• Sequence: 4 - AAAGGAACGAUCGUUGUGAUAUG - 26
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-5-3p

• Accession: MIMAT0032084
• Description: Drosophila virilis dvi-miR-5-3p mature miRNA
• Sequence: 45 - UAUCACAGUGAUUUUCCUUUAU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372