Stem-loop dvi-mir-92b

Accession

MI0009530

Description

Drosophila virilis dvi-mir-92b precursor miRNA

Literature search

1 open access papers mention dvi-mir-92b
(6 sentences)

Sequence

601063 reads, 15808.0 reads per million, 39 experiments

aacgucaccugauguAGGUCGUGCCUGGUGCUUAUUUGUuguuaugcgaaaauccaAAUUGCACUAGUCCCGGCCUGcagugagugucgca
..((.(((....(((((((((.(.(((((((..(((((((((...)))).....))))).))))))).).)))))))))....))).))..

Structure

aa  u   cuga         U C       UU     -----    u 
  cg cac    uguAGGUCG G CUGGUGC  AUUUG     Uugu  
  || |||    ||||||||| | |||||||  |||||     |||| a
  gc gug    acGUCCGGC C GAUCACG  UAAac     agcg  
ac  u   agug         C U       -U     cuaaa    u 

Annotation confidence High

Genome context

scaffold_12855: 6883810-6883900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-92b

Mature dvi-miR-92b-5p

• Accession: MIMAT0032085
• Description: Drosophila virilis dvi-miR-92b-5p mature miRNA
• Sequence: 16 - AGGUCGUGCCUGGUGCUUAUUUGU - 39
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-92b-3p

• Accession: MIMAT0008962
• Description: Drosophila virilis dvi-miR-92b-3p mature miRNA
• Sequence: 57 - AAUUGCACUAGUCCCGGCCUG - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372