miRBase entry: dvi-mir-92b

Stem-loop dvi-mir-92b

Accession

MI0009530

Description

Drosophila virilis dvi-mir-92b precursor miRNA

Literature search

1 open access papers mention dvi-mir-92b
(7 sentences)

Sequence

aacgucaccugauguAGGUCGUGCCUGGUGCUUAUUUGuuguuaugcgaaaauccaAAUUGCACUAGUCCCGGCCUGCagugagugucgca
..((.(((....(((((((((.(.(((((((..(((((((((...)))).....))))).))))))).).)))))))))....))).))..

Structure

aa  u   cuga         U C       UU     -----    u 
  cg cac    uguAGGUCG G CUGGUGC  AUUUG     uugu  
  || |||    ||||||||| | |||||||  |||||     |||| a
  gc gug    aCGUCCGGC C GAUCACG  UAAac     agcg  
ac  u   agug         C U       -U     cuaaa    u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_12855: 6883810-6883900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-92b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-92b-3p

Accession	MIMAT0008962
Description	Drosophila virilis dvi-miR-92b-3p mature miRNA
Sequence	57 - AAUUGCACUAGUCCCGGCCUGC - 78
Evidence	experimental Illumina [2]

Mature dvi-miR-92b-5p

Accession	MIMAT0032085
Description	Drosophila virilis dvi-miR-92b-5p mature miRNA
Sequence	16 - AGGUCGUGCCUGGUGCUUAUUUG - 38
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372