Stem-loop dvi-mir-308

Accession

MI0009535

Description

Drosophila virilis dvi-mir-308 precursor miRNA

Sequence

12106 reads, 120.0 reads per million, 39 experiments

cuCGCAGUAUACUUUUGUGUUUUGUuuauuuugaaaaucaAAUCACAGGAUUAUACUGUGAg
(((((((((((.(((((((.((((.((........)).)))).))))))).)))))))))))

Structure

           C       U    U  auu 
cuCGCAGUAUA UUUUGUG UUUG uu   u
||||||||||| ||||||| |||| ||    
gAGUGUCAUAU AGGACAC AAac aa   u
           U       U    u  aag 

Annotation confidence High

Genome context

scaffold_12875: 17605307-17605368 [+]

Mature dvi-miR-308-5p

• Accession: MIMAT0032088
• Description: Drosophila virilis dvi-miR-308-5p mature miRNA
• Sequence: 3 - CGCAGUAUACUUUUGUGUUUUGU - 25
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-308-3p

• Accession: MIMAT0008968
• Description: Drosophila virilis dvi-miR-308-3p mature miRNA
• Sequence: 41 - AAUCACAGGAUUAUACUGUGA - 61
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372