Stem-loop dvi-mir-31b

Accession

MI0009540

Description

Drosophila virilis dvi-mir-31b precursor miRNA

Literature search

1 open access papers mention dvi-mir-31b
(1 sentences)

Sequence

162029 reads, 606.0 reads per million, 38 experiments

caaauaaugaauuUGGCAAGAUGUCGGAAUAGCUgagagcacaaagucauaaauccagaauuucuauuuuguguauuuuuauugaguacagcGGCUAUGCCUCAUCUAGUCAAUugcauucauuug
(((((((((...(((((.(((((..((.(((((((.((........)).......((((((....))))))(((((((.....))))))).))))))).)).))))).)))))...)))).)))))

Structure

     -    aau     A     UC  A       agagcacaaagucauaaauccagaauuucuauuuug       u 
caaau aaug   uUGGC AGAUG  GG AUAGCUg                                    uguauuu u
||||| ||||   ||||| |||||  || |||||||                                    ||||||| a
guuua uuac   AACUG UCUAC  CC UAUCGGc                                    acaugag u
     c    guU     A     -U  G       -----------------------------------g       u 

Annotation confidence High

Genome context

scaffold_12726: 2775754-2775879 [-]

Mature dvi-miR-31b-5p

• Accession: MIMAT0008972
• Description: Drosophila virilis dvi-miR-31b-5p mature miRNA
• Sequence: 14 - UGGCAAGAUGUCGGAAUAGCU - 34
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-31b-3p

• Accession: MIMAT0053499
• Description: Drosophila virilis dvi-miR-31b-3p mature miRNA
• Sequence: 93 - GGCUAUGCCUCAUCUAGUCAAU - 114
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372