Stem-loop dvi-mir-100

Accession

MI0009541

Description

Drosophila virilis dvi-mir-100 precursor miRNA

Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGugcuguuuuauaucuguuaCAAGACCGGCAUUAUGGGAGUCugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure

-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGug c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa uguCU  GGGUAUU  GGC  GAACau g c   a
ac    c     GA       AC   CA      u u uau 

Annotation confidence Not enough data

Genome context

scaffold_12963: 18449845-18449926 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-100

Mature dvi-miR-100-5p

• Accession: MIMAT0008973
• Description: Drosophila virilis dvi-miR-100-5p mature miRNA
• Sequence: 12 - AACCCGUAAAUCCGAACUUG - 31
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-100-3p

• Accession: MIMAT0032093
• Description: Drosophila virilis dvi-miR-100-3p mature miRNA
• Sequence: 51 - CAAGACCGGCAUUAUGGGAGUC - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372