Stem-loop dvi-mir-304

Accession

MI0009544

Description

Drosophila virilis dvi-mir-304 precursor miRNA

Sequence

gcagcauugauUAAUCUCAAUUUGUAAAUGUGAgcgauuuuaaaguauuugacgcacuCACUUUGCAAUUGGAGAUUGCUcgagauugc
((((..((((.(((((((...(((((((.(((((.(.(.(((((...))))).)).))))))))))))...))))))).))))..))))

Structure

    ca    u       AAU       U     c a u     g 
gcag  uuga UAAUCUC   UUGUAAA GUGAg g u uuaaa  
||||  |||| |||||||   ||||||| ||||| | | ||||| u
cguu  agcU GUUAGAG   AACGUUU CACuc c g aguuu  
    ag    C       GUU       -     a - c     a 

Annotation confidence Not enough data

Genome context

scaffold_12970: 2048753-2048841 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-304

Mature dvi-miR-304-5p

• Accession: MIMAT0008976
• Description: Drosophila virilis dvi-miR-304-5p mature miRNA
• Sequence: 12 - UAAUCUCAAUUUGUAAAUGUGA - 33
• Evidence: experimental ; Illumina [2]

Mature dvi-miR-304-3p

• Accession: MIMAT0032096
• Description: Drosophila virilis dvi-miR-304-3p mature miRNA
• Sequence: 59 - CACUUUGCAAUUGGAGAUUGCU - 80
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372