miRBase entry: dya-mir-288

Stem-loop dya-mir-288

Accession

MI0009668

Description

Drosophila yakuba dya-mir-288 precursor miRNA

Sequence

cggucaugucguaauuagcggagcacggcguugccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggcc
.((((.((((((((((.(((((((.((((((.((((.((...........)).)))).)))))))))))..)).)))).......)))))).))))

Structure

c    a      -------    a  --     a      u    g  auaa 
 gguc ugucgu       aauu gc  ggagc cggcgu gccg cg    u
 |||| ||||||       |||| ||  ||||| |||||| |||| ||    u
 ccgg acaGUA       UUAG UG  CUUUg guugca uggu gc    a
-    c      CUUUACU    C  UA     -      c    g  agua

Annotation confidence Not enough data

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Genome context

chr2R: 6966496-6966591 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dya-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dya-miR-288

Accession	MIMAT0009094
Description	Drosophila yakuba dya-miR-288 mature miRNA
Sequence	66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218