Stem-loop pta-MIR1313

Accession

MI0009710

Description

Pinus taeda pta-MIR1313 precursor miRNA

Sequence

augguauucUACCACUGAAAUUAUUGUUCGaaauaacaccugcaauucauggauguauacugccgugguaugguauccuacaguguauccccagucuaaccuaguugcaggguugcaacacauggcauggugggggaucuacugggcaauaaccaaguugcauggguguauuuauccaacaauaauuucaguggaagacuuccaucgau
((((...(((.(((((((((((((((((.((((..((((((((((((..(((.(((....((((..((........))..(((((.((((((..((...((..((((((....))))))....))...))..)))))).)))))))))))).)))))))))..))))))..)).)).))))))))))))))))).)))...))))....

Structure

----    uau   A                 C  -  ua      --      ca   a   auac    gugguaugguauccua     u      ag  uaa  --ua      g 
    augg   ucU CCACUGAAAUUAUUGUU Ga aa  acaccu  gcaauu  ugg ugu    ugcc                cagug aucccc  uc   cc    guugca g
    ||||   ||| ||||||||||||||||| || ||  ||||||  ||||||  ||| |||    ||||                ||||| ||||||  ||   ||    ||||||  
    uacc   aga ggugacuuuaauaacaa cu uu  uguggg  cguuga  acc aua    acgg                gucau uagggg  gg   gg    caacgu g
uagc    uuc   a                 c  a  ua      ua      --   a   ----    ----------------     c      gu  uac  uaca      u 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR1313

• Accession: MIMAT0009130
• Description: Pinus taeda pta-miR1313 mature miRNA
• Sequence: 10 - UACCACUGAAAUUAUUGUUCG - 30
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584