Stem-loop sly-MIR159

Accession

MI0009974

Description

Solanum lycopersicum sly-MIR159 precursor miRNA

Literature search

45 open access papers mention sly-MIR159
(236 sentences)

Sequence

8481769 reads, 130415.0 reads per million, 82 experiments

ugGAGCUCCUUGAAGUCCAACAaaaaaucuaacagguuaaauugagcugcugaccuauggauuccucagcccuaucuauuuaugauuucaaacauauagauagguuuuggguuugcauaugucaggagcuuuauuuuacccuuuguuugaucauuuUUUGGAUUGAAGGGAGCUCUA
(((((((((((..(((((((.(((..(((.(((((((.((((.(((((.(((((.((((.(..(((.((.((((((((..((((........)))))))))))).)).)))..).)))).))))).))))).)))).)))...)))).)))..))).)))))))..)))))))))))

Structure

           GA       C   aa   u    ---   u    u     g     c    g uu   c  c        uu    auu 
ugGAGCUCCUU  AGUCCAA Aaa  auc aaca   ggu aaau gagcu cugac uaug a  ccu ag ccuaucua  uaug   u
|||||||||||  ||||||| |||  ||| ||||   ||| |||| ||||| ||||| |||| |  ||| || ||||||||  ||||    
AUCUCGAGGGA  UUAGGUU uuu  uag uugu   cca uuua uucga gacug auac u  ggg uu ggauagau  auac   c
           AG       U   ac   u    uuc   u    u     g     u    g uu   u  u        --    aaa 

Annotation confidence High

Genome context

Unknown

Mature sly-miR159-5p

• Accession: MIMAT0055722
• Description: Solanum lycopersicum sly-miR159-5p mature miRNA
• Sequence: 3 - GAGCUCCUUGAAGUCCAACA - 22
• Evidence: experimental ; unknown

Mature sly-miR159-3p

• Accession: MIMAT0009141
• Description: Solanum lycopersicum sly-miR159-3p mature miRNA
• Sequence: 157 - UUUGGAUUGAAGGGAGCUCUA - 177
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7