Stem-loop sly-MIR172a

Accession

MI0009976

Description

Solanum lycopersicum sly-MIR172a precursor miRNA

Literature search

33 open access papers mention sly-MIR172a
(151 sentences)

Sequence

625511 reads, 16498.0 reads per million, 81 experiments

auGUGGCAUAAUCAAGAUUCACGugaaaaguugcaaauugguuauauaauugaugaaauuaauggcuggcuauuugaaacucacgAGAAUCUUGAUGAUGCUGCAU
(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...))))).)))))))).)))))))))).)))))))))

Structure

         A          A     aaa   g     ---       a     g 
auGUGGCAU AUCAAGAUUC CGuga   guu caaau   ugguuau uaauu a
||||||||| |||||||||| |||||   ||| |||||   ||||||| ||||| u
UACGUCGUA UAGUUCUAAG gcacu   caa guuua   gucggua auuaa g
         G          A     ---   a     ucg       -     a 

Annotation confidence High

Genome context

chr6: 46528836-46528941 [+]

Mature sly-miR172a-5p

• Accession: MIMAT0055723
• Description: Solanum lycopersicum sly-miR172a-5p mature miRNA
• Sequence: 3 - GUGGCAUAAUCAAGAUUCACG - 23
• Evidence: experimental ; unknown

Mature sly-miR172a-3p

• Accession: MIMAT0009143
• Description: Solanum lycopersicum sly-miR172a-3p mature miRNA
• Sequence: 86 - AGAAUCUUGAUGAUGCUGCAU - 106
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7