Stem-loop sly-MIR172b

Accession

MI0009977

Description

Solanum lycopersicum sly-MIR172b precursor miRNA

Literature search

29 open access papers mention sly-MIR172b
(127 sentences)

Sequence

576475 reads, 14850.0 reads per million, 81 experiments

auGUAGCAUCAUCAAGAUUCAUAcaugaaaauuaagaggcaagguuaaauauguagcuuuaauuugaaaugaaaaauauaauauaucaugaccaugucuauuuauuucaaagugAGAAUCUUGAUGAUGCUGCAU
((((((((((((((((((((.(((.(((((..(((((((((.(((((...(((((......((((........))))....)))))..))))).))))).)))))))))..))).))))))))))))))))))))

Structure

                    A   -a     au    -     a     aau     gcuuua    gaa 
auGUAGCAUCAUCAAGAUUC UAc  ugaaa  uaag aggca gguua   augua      auuu   a
|||||||||||||||||||| |||  |||||  |||| ||||| |||||   |||||      ||||    
UACGUCGUAGUAGUUCUAAG gug  acuuu  auuu ucugu ccagu   uauau      uaaa   u
                    A   aa     --    a     a     -ac     --aaua    aag 

Annotation confidence High

Comments

This sequence was named MIR172c in [1].

Genome context

chr11: 54397709-54397843 [+]

Mature sly-miR172b-5p

• Accession: MIMAT0055724
• Description: Solanum lycopersicum sly-miR172b-5p mature miRNA
• Sequence: 3 - GUAGCAUCAUCAAGAUUCAUA - 23
• Evidence: experimental ; unknown

Mature sly-miR172b-3p

• Accession: MIMAT0009144
• Description: Solanum lycopersicum sly-miR172b-3p mature miRNA
• Sequence: 115 - AGAAUCUUGAUGAUGCUGCAU - 135
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7