Stem-loop sly-MIR319a

Accession

MI0009978

Description

Solanum lycopersicum sly-MIR319a precursor miRNA

Literature search

23 open access papers mention sly-MIR319a
(167 sentences)

Sequence

gagcuucuuuaguccacacauggggaacgauaggguucaauuugcugccgacucauucauccaaauguugaggucuugauaaucgagugccaccucagcaacugagugaaugaagcgggaguacaaguugagucuugagcuuccuguaCUUGGACUGAAGGGAGCUCC
((((((((((((((((...(((((((.(..((((((((((((((((.(((..((((((((.((..((((((((((((((...)))))....)))))))))..)).))))))))..))).))..)))))))))))))).).)))))))...))))))))).))))))).

Structure

-       -         cac       a ga              --  g   ac        c  aa         ----     u 
 gagcuuc uuuagucca   augggga c  uaggguucaauuug  cu ccg  ucauucau ca  uguugaggu    cuuga  
 ||||||| |||||||||   ||||||| |  ||||||||||||||  || |||  |||||||| ||  |||||||||    ||||| a
 CUCGAGG AAGUCAGGU   uguccuu g  guucugaguugaac  ga ggc  aguaagug gu  acgacucca    gagcu  
C       G         UCa       c -a              au  g   ga        a  ca         ccgu     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature sly-miR319a

• Accession: MIMAT0009145
• Description: Solanum lycopersicum sly-miR319a mature miRNA
• Sequence: 149 - CUUGGACUGAAGGGAGCUCC - 168
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7