miRBase entry: sly-MIR319a

Stem-loop sly-MIR319a


Accession
MI0009978
Description
Solanum lycopersicum sly-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
23 open access papers mention sly-MIR319a
(167 sentences)

Sequence

gagcuucuuuaguccacacauggggaacgauaggguucaauuugcugccgacucauucauccaaauguugaggucuugauaaucgagugccaccucagcaacugagugaaugaagcgggaguacaaguugagucuugagcuuccuguaCUUGGACUGAAGGGAGCUCC
((((((((((((((((...(((((((.(..((((((((((((((((.(((..((((((((.((..((((((((((((((...)))))....)))))))))..)).))))))))..))).))..)))))))))))))).).)))))))...))))))))).))))))).

Structure
-       -         cac       a ga              --  g   ac        c  aa         ----     u 
 gagcuuc uuuagucca   augggga c  uaggguucaauuug  cu ccg  ucauucau ca  uguugaggu    cuuga  
 ||||||| |||||||||   ||||||| |  ||||||||||||||  || |||  |||||||| ||  |||||||||    ||||| a
 CUCGAGG AAGUCAGGU   uguccuu g  guucugaguugaac  ga ggc  aguaagug gu  acgacucca    gagcu  
C       G         UCa       c -a              au  g   ga        a  ca         ccgu     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sly-miR319a

Accession MIMAT0009145
Description Solanum lycopersicum sly-miR319a mature miRNA
Sequence 149 - CUUGGACUGAAGGGAGCUCC - 168
Evidence not_experimental

References

  1. PubMed ID: 18602455
    Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
    "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
    "Gene (2008) 423:1-7