Stem-loop sly-MIR399

Accession

MI0009979

Description

Solanum lycopersicum sly-MIR399 precursor miRNA

Literature search

28 open access papers mention sly-MIR399
(57 sentences)

Sequence

5505 reads, 154.0 reads per million, 81 experiments

uaGGGCUACACUCUAUUGGCAUGcaacuugaucaaauauuugagcugaaaUGCCAAAGGAGAGUUGCCCUA
((((((.((.((((.(((((((.((.(((((........))))).))..))))))).)))).)).))))))

Structure

      U  A    A       -G  a     uca 
uaGGGC AC CUCU UUGGCAU  ca cuuga   a
|||||| || |||| |||||||  || |||||    
AUCCCG UG GAGG AACCGUa  gu gaguu   a
      U  A    A       aa  c     uau 

Annotation confidence High

Genome context

chr3: 3965922-3965992 [+]

Mature sly-miR399-5p

• Accession: MIMAT0055726
• Description: Solanum lycopersicum sly-miR399-5p mature miRNA
• Sequence: 3 - GGGCUACACUCUAUUGGCAUG - 23
• Evidence: experimental ; unknown

Mature sly-miR399-3p

• Accession: MIMAT0009146
• Description: Solanum lycopersicum sly-miR399-3p mature miRNA
• Sequence: 51 - UGCCAAAGGAGAGUUGCCCUA - 71
• Evidence: not_experimental

References

1. PubMed ID: 18602455
   Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill
   "Zhang J, Zeng R, Chen J, Liu X, Liao Q"
   "Gene (2008) 423:1-7