Stem-loop mmu-mir-1839

Accession

MI0009991

Symbol

MGI: Mir1839

Description

Mus musculus mmu-mir-1839 precursor miRNA

Literature search

5 open access papers mention mmu-mir-1839
(17 sentences)

Sequence

1048444 reads, 2293 reads per million, 107 experiments

gaaAAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauucaAGACCUACUUAUCUACCAACAGCcauugccu
.....(((((((((...((((((((..(.........)..))))))))..)))))))))..............

Structure

---------gaaAA         AAC        uu gca 
              GGUAGAUAG   AGGUCUUG  u   a
              |||||||||   ||||||||  |   a
              CCAUCUAUU   UCCAGAac  a   a
uccguuacCGACAA         -CA        uu aau 

Annotation confidence Medium

Comments

This sequence was named mmu-mir-1980 in [1], but is a clear ortholog of the mir-1839 sequence published in dog (MIR:MI0008087), so is renamed here.

Genome context

chr7: 81529916-81529988 [+]

Mature mmu-miR-1839-5p

• Accession: MIMAT0009456
• Description: Mus musculus mmu-miR-1839-5p mature miRNA
• Sequence: 4 - AAGGUAGAUAGAACAGGUCUUG - 25
• Evidence: experimental ; Illumina [1-2]

Mature mmu-miR-1839-3p

• Accession: MIMAT0009457
• Description: Mus musculus mmu-miR-1839-3p mature miRNA
• Sequence: 43 - AGACCUACUUAUCUACCAACAGC - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 18923076
   Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
   "Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R"
   "Genes Dev (2008) 22:2773-2785