Stem-loop bmo-mir-12

Accession

MI0009994

Description

Bombyx mori bmo-mir-12 precursor miRNA

Literature search

7 open access papers mention bmo-mir-12
(10 sentences)

Sequence

30777 reads, 651.0 reads per million, 34 experiments

uucUGAGUAUUACUUCAGGUACUGGUuguauuaaauaaaaaacggaauaaguuauuaacacagccUAAUAGAGAUAUUACGGAUUUACGA
.((((((((((.((..(((..(((((((...........................)))).))))))...)).)))))).)))).......

Structure

------u    -      A  -UC   UA   -    uauuaaauaaaa 
       ucUG AGUAUU CU   AGG  CUG GUug            a
       |||| |||||| ||   |||  ||| ||||            a
       AGGC UUAUAG GA   Ucc  gac caau            c
AGCAUUU    A      A  UAA   --   a    uauugaauaagg 

Annotation confidence Medium

Genome context

dbj|BSVE01000024.1|: 987368-987457 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-12

Mature bmo-miR-12-5p

• Accession: MIMAT0009151
• Description: Bombyx mori bmo-miR-12-5p mature miRNA
• Sequence: 4 - UGAGUAUUACUUCAGGUACUGGU - 26
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-12-3p

• Accession: MIMAT0053132
• Description: Bombyx mori bmo-miR-12-3p mature miRNA
• Sequence: 66 - UAAUAGAGAUAUUACGGAUUUACGA - 90
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997