Stem-loop bmo-mir-190

Accession

MI0009996

Description

Bombyx mori bmo-mir-190 precursor miRNA

Literature search

1 open access papers mention bmo-mir-190
(3 sentences)

Sequence

4138 reads, 706 reads per million, 3 experiments

gagccgcgcgucgucgAGAUAUGUUUGAUAUUCUUGGUUguuuguuuuggaucaCCCGGGAAUCAAACAUAUUACUCUacgaccgcggcc
..((((((.(((((.((((((((((((((..((((((.((.((......)).)).)))))))))))))))))..))).))))))))))).

Structure

ga      c     c   --           AU      U  u  gu 
  gccgcg gucgu gAG  AUAUGUUUGAU  UCUUGG Ug uu  u
  |||||| ||||| |||  |||||||||||  |||||| || ||   
  cggcgc cagca CUC  UAUACAAACUA  AGGGCC ac ag  u
-c      -     U   AU           --      C  u  gu 

Annotation confidence Medium

Genome context

NW_004581767.1: 450675-450764 [+]

Mature bmo-miR-190-5p

• Accession: MIMAT0009153
• Description: Bombyx mori bmo-miR-190-5p mature miRNA
• Sequence: 17 - AGAUAUGUUUGAUAUUCUUGGUU - 39
• Evidence: experimental ; RT-PCR [2], Illumina [3]

Mature bmo-miR-190-3p

• Accession: MIMAT0015287
• Description: Bombyx mori bmo-miR-190-3p mature miRNA
• Sequence: 55 - CCCGGGAAUCAAACAUAUUACUCU - 78
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


3. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997