Stem-loop bmo-mir-92b

Accession

MI0009998

Description

Bombyx mori bmo-mir-92b precursor miRNA

Literature search

6 open access papers mention bmo-mir-92b
(17 sentences)

Sequence

239918 reads, 5289.0 reads per million, 34 experiments

gcgguggccacgcuuAGGACGCGAUUAGGUGUAAACGUUUguguuucauaucaAAUUGCACCAAUCCCGGCCUGCcuguggccacagc
((.(((((((((..((((.((.((((.(((((((.....((((...)))).....))))))))))).)).))))..))))))))).))

Structure

  g         cu    A  C    A       ACGUU    u 
gc guggccacg  uAGG CG GAUU GGUGUAA     Ugug  
|| |||||||||  |||| || |||| |||||||     |||| u
cg caccggugu  GUCC GC CUAA CCACGUU     auac  
  a         cC    G  C    -       AAacu    u 

Annotation confidence High

Genome context

dbj|BSVE01000007.1|: 12345453-12345540 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-92b

Mature bmo-miR-92b-5p

• Accession: MIMAT0053135
• Description: Bombyx mori bmo-miR-92b-5p mature miRNA
• Sequence: 16 - AGGACGCGAUUAGGUGUAAACGUUU - 40
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bmo-miR-92b-3p

• Accession: MIMAT0009155
• Description: Bombyx mori bmo-miR-92b-3p mature miRNA
• Sequence: 54 - AAUUGCACCAAUCCCGGCCUGC - 75
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997