Stem-loop bmo-mir-9b

Accession

MI0010004

Description

Bombyx mori bmo-mir-9b precursor miRNA

Literature search

5 open access papers mention bmo-mir-9b
(19 sentences)

Sequence

4231 reads, 2 reads per million, 3 experiments

gacggcgcgacgcgauGCUUUGGUAAUCUAGCUUUAUGAacggaaugaugucACGGAGCUAAAUCGCCAAAGCGucgcagcgcgcccggc
...((((((..(((((((((((((.((.(((((((.(((.((......))))).))))))).)).)))))))))))))..))))))....

Structure

-gac      ac             A  C       A   a  ga 
    ggcgcg  gcgauGCUUUGGU AU UAGCUUU UGA cg  a
    ||||||  ||||||||||||| || ||||||| ||| ||   
    ccgcgc  cgcuGCGAAACCG UA AUCGAGG Acu gu  u
cggc      ga             C  A       C   -  ag 

Annotation confidence Not enough data

Genome context

NW_004581774.1: 31448-31537 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-9b

Mature bmo-miR-9b-5p

• Accession: MIMAT0009161
• Description: Bombyx mori bmo-miR-9b-5p mature miRNA
• Sequence: 17 - GCUUUGGUAAUCUAGCUUUAUGA - 39
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-9b-3p

• Accession: MIMAT0015290
• Description: Bombyx mori bmo-miR-9b-3p mature miRNA
• Sequence: 53 - ACGGAGCUAAAUCGCCAAAGCG - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997