Stem-loop bmo-mir-iab-4

Accession

MI0010005

Description

Bombyx mori bmo-mir-iab-4 precursor miRNA

Sequence

608 reads, 101 reads per million, 3 experiments

gcgucgccuucuguACGUAUACUGAAUGUAUCCUGAgugcgcgauucuugucCGGUAUACCUUCAGUAUACGUAACagaagaugacac
..((((.(((((((((((((((((((.((((((.((..............)).)).)))).)))))))))))).))))))).))))..

Structure

gc    c       -            U    -  U  gugcgc 
  gucg cuucugu ACGUAUACUGAA GUAU CC GA      g
  |||| ||||||| |||||||||||| |||| || ||       
  cagu gaagaCA UGCAUAUGACUU CAUA GG cu      a
ca    a       A            C    U  C  guucuu 

Annotation confidence High

Genome context

NW_004582018.1: 3486590-3486677 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-iab-4

Mature bmo-miR-iab-4-5p

• Accession: MIMAT0009162
• Description: Bombyx mori bmo-miR-iab-4-5p mature miRNA
• Sequence: 15 - ACGUAUACUGAAUGUAUCCUGA - 36
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-iab-4-3p

• Accession: MIMAT0009163
• Description: Bombyx mori bmo-miR-iab-4-3p mature miRNA
• Sequence: 53 - CGGUAUACCUUCAGUAUACGUAAC - 76
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997