Stem-loop bmo-mir-278

Accession

MI0010006

Description

Bombyx mori bmo-mir-278 precursor miRNA

Literature search

5 open access papers mention bmo-mir-278
(16 sentences)

Sequence

12445 reads, 2307 reads per million, 3 experiments

guaucaagugcuacgcCCGGACGAACUUCCCAGCUCGGccgacaaucaggggUCGGUGGGAUCUUCGUCCGUUUguaucgcuuauac
((((.(((((.((((..((((((((..(((((.(.(((((..........)))))))))))..))))))))..)))).)))))))))

Structure

    c     c    cC        CU     G U     gaca 
guau aagug uacg  CGGACGAA  UCCCA C CGGcc    a
|||| ||||| ||||  ||||||||  ||||| | |||||     
caua uucgc augU  GCCUGCUU  AGGGU G GCUgg    u
    -     u    UU        CU     - -     ggac 

Annotation confidence High

Genome context

NW_004582026.1: 5082537-5082623 [+]

Mature bmo-miR-278-5p

• Accession: MIMAT0015291
• Description: Bombyx mori bmo-miR-278-5p mature miRNA
• Sequence: 17 - CCGGACGAACUUCCCAGCUCGG - 38
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-278-3p

• Accession: MIMAT0009164
• Description: Bombyx mori bmo-miR-278-3p mature miRNA
• Sequence: 53 - UCGGUGGGAUCUUCGUCCGUUU - 74
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997