miRBase entry: bfl-let-7a-2

Stem-loop bfl-let-7a-2

Accession

MI0010007

Description

Branchiostoma floridae bfl-let-7a-2 precursor miRNA

Sequence

agacacgggugcaccugaggUGAGGUAGUAGGUUGUAUAGUUgagaaguacaucauuggagauaacugugcaaccugcuagcucuccuuggggcaugcc
......(.((((.(((((((.(((.((((((((((((((((((.......((....))....)))))))))))))))))).))).))))))))))).).

Structure

agacac g    a       U   G                  agaagua  u 
      g gugc ccugagg GAG UAGUAGGUUGUAUAGUUg       ca c
      | |||| ||||||| ||| ||||||||||||||||||       ||  
      c uacg ggguucc cuc aucguccaacgugucaau       gu a
-----c g    -       u   g                  ---agag  u

Annotation confidence Not enough data

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Genome context

GG666478.1: 2707847-2707945 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bfl-let-7a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bfl-let-7a-5p

Accession	MIMAT0009462
Description	Branchiostoma floridae bfl-let-7a-5p mature miRNA
Sequence	21 - UGAGGUAGUAGGUUGUAUAGUU - 42
Evidence	experimental cloned [1]

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68