Stem-loop cte-mir-1175

Accession

MI0010093

Description

Capitella teleta cte-mir-1175 precursor miRNA mir-1175

Gene
family

RF03189; mir-1175

Sequence

ugcuugagauuAGUGGAGAGAGUUUUAUCUCAUcgagcuugauuugggUGAGAUUCAACUCCUCCAACUGCucucacacugaauuug
....(((((.((((((((.(((((..((((((((.((......)).))))))))..))))))))).)))).)))))...........

Structure

-------ugcu     u    -    A     UU        g  cu 
           ugaga uAGU GGAG GAGUU  AUCUCAUc ag  u
           ||||| |||| |||| |||||  |||||||| ||   
           acucu GUCA CCUC CUCAA  UAGAGUgg uu  g
guuuaagucac     C    A    -     CU        g  ua 

Annotation confidence Not enough data

Genome context

KB311954.1: 15440-15526 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cte-mir-1175

Mature cte-miR-1175-5p

• Accession: MIMAT0009549
• Description: Capitella teleta cte-miR-1175-5p mature miRNA
• Sequence: 12 - AGUGGAGAGAGUUUUAUCUCAU - 33
• Evidence: experimental ; 454 [1]

Mature cte-miR-1175-3p

• Accession: MIMAT0009550
• Description: Capitella teleta cte-miR-1175-3p mature miRNA
• Sequence: 49 - UGAGAUUCAACUCCUCCAACUGC - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68